Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00638.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3174
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29


Found at i:2945 original size:245 final size:245

Alignment explanation


    Indices: 2509--2964  Score: 761
    Period size: 245  Copynumber: 1.9  Consensus size: 245

       2499 AAAGGTTGTT

                 *                               * *    * * *                
       2509 CTCTCTAAACTGTGTGCCGCCAAATTTAGAAGAGCTTTATATTTGGCATTGTAACCAACTGGAGG
          1 CTCTCCAAACTGTGTGCCGCCAAATTTAGAAGAGCTTGAGATTTCGAAATGTAACCAACTGGAGG

                                      *                                    * 
       2574 AAATAATAGCATCAGAGGAAAGAGGATGGGTTACCATGGAAGATTGTCTTCCACGATTAAAGAGA
         66 AAATAATAGCATCAGAGGAAAGAGGAAGGGTTACCATGGAAGATTGTCTTCCACGATTAAAGAAA

                *                                                           *
       2639 ATGATATTGCGTTCTTTACCTGAATTGAAGAGCATTTGCAGTGTTGATGCAGTAATGATTTGTGG
        131 ATGACATTGCGTTCTTTACCTGAATTGAAGAGCATTTGCAGTGTTGATGCAGTAATGATTTGTGA

                                                              
       2704 ATCTCTTGAATATCTTAAGGTAGACTCTTGTCCGAAATTAAAAGGACGTC
        196 ATCTCTTGAATATCTTAAGGTAGACTCTTGTCCGAAATTAAAAGGACGTC

                                                     *                       
       2754 CTCTCCAAACTGTGTGCCGCCAAATTTAGAACG-GCTTGAGGTTTCGAAATGTAACCAACTGGAG
          1 CTCTCCAAACTGTGTGCCGCCAAATTTAGAA-GAGCTTGAGATTTCGAAATGTAACCAACTGGAG

                                                      **                     
       2818 GAAATAATAGCATCAGAGGAAAGAGGAAGGGTTACCATGGAATTTTGTCTTCCACGATTAAAGAA
         65 GAAATAATAGCATCAGAGGAAAGAGGAAGGGTTACCATGGAAGATTGTCTTCCACGATTAAAGAA

                      *                                                      
       2883 AATGACATTGTGTTCTTTACCTGAATTGAAGAGCATTTGCAGTGTTGATGCAGTAATGATTTGTG
        130 AATGACATTGCGTTCTTTACCTGAATTGAAGAGCATTTGCAGTGTTGATGCAGTAATGATTTGTG

                        *    
       2948 AATCTCTTGAATTTCTT
        195 AATCTCTTGAATATCTT

       2965 GCAGTAGAAT


Statistics
Matches: 195,  Mismatches: 15, Indels: 2
        0.92            0.07        0.01

Matches are distributed among these distances:
 245  194  0.99
 246    1  0.01

ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31


Consensus pattern (245 bp):   
CTCTCCAAACTGTGTGCCGCCAAATTTAGAAGAGCTTGAGATTTCGAAATGTAACCAACTGGAGG
AAATAATAGCATCAGAGGAAAGAGGAAGGGTTACCATGGAAGATTGTCTTCCACGATTAAAGAAA
ATGACATTGCGTTCTTTACCTGAATTGAAGAGCATTTGCAGTGTTGATGCAGTAATGATTTGTGA
ATCTCTTGAATATCTTAAGGTAGACTCTTGTCCGAAATTAAAAGGACGTC

Done.