Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00640.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1345
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41


Found at i:765 original size:49 final size:50

Alignment explanation


    Indices: 708--806  Score: 191
    Period size: 50  Copynumber: 2.0  Consensus size: 50

        698 ATAATTTACG

                                                              
        708 ATCATTATT-TTTTATTTTATTTTTTATGACATACCGATCTATTGATTGT
          1 ATCATTATTATTTTATTTTATTTTTTATGACATACCGATCTATTGATTGT

                                                              
        757 ATCATTATTATTTTATTTTATTTTTTATGACATACCGATCTATTGATTGT
          1 ATCATTATTATTTTATTTTATTTTTTATGACATACCGATCTATTGATTGT

        807 CGGCAAAAAA


Statistics
Matches: 49,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  49    9  0.18
  50   40  0.82

ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57


Consensus pattern (50 bp):   
ATCATTATTATTTTATTTTATTTTTTATGACATACCGATCTATTGATTGT

Done.