Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00641.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4068
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28


Found at i:1972 original size:30 final size:30

Alignment explanation


    Indices: 1938--2000  Score: 117
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1928 AAGCCACTCA

                                    *     
       1938 GACTCCTAACAAATTGATTATGTCTTCTTT
          1 GACTCCTAACAAATTGATTATGTCCTCTTT

                                          
       1968 GACTCCTAACAAATTGATTATGTCCTCTTT
          1 GACTCCTAACAAATTGATTATGTCCTCTTT

               
       1998 GAC
          1 GAC

       2001 ACCAGGATCC


Statistics
Matches: 32,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   32  1.00

ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40


Consensus pattern (30 bp):   
GACTCCTAACAAATTGATTATGTCCTCTTT
Done.