Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00652.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 927

Length: 1546
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:253 original size:6 final size:6

Alignment explanation


    Indices: 236--267  Score: 55
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        226 TGCCTTCTTC

                                                 
        236 TCCCCTT TCCCCT TCCCCT TCCCCT TCCCCT T
          1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT T

        268 GGGTTGCAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   20  0.80
   7    5  0.20

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (6 bp):   
TCCCCT

Found at i:314 original size:19 final size:17

Alignment explanation


    Indices: 290--326  Score: 56
    Period size: 19  Copynumber: 2.1  Consensus size: 17

        280 AAATCAGTGC

                               
        290 CATTCCTTCTTCCGTTCTT
          1 CATTCCTTC-TCC-TTCTT

                             
        309 CATTCCTTCTCCTTCTT
          1 CATTCCTTCTCCTTCTT

             
        326 C
          1 C

        327 GGTTCCTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17    6  0.33
  18    3  0.17
  19    9  0.50

ACGTcount: A:0.05, C:0.41, G:0.03, T:0.51


Consensus pattern (17 bp):   
CATTCCTTCTCCTTCTT
Done.