Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00657.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3787
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30


Found at i:3136 original size:58 final size:58

Alignment explanation


    Indices: 3046--3163  Score: 236
    Period size: 58  Copynumber: 2.0  Consensus size: 58

       3036 TAAGAAGCTT

                                                                      
       3046 GGAGCTGTAATATATCTCCCTTTTGTTCAACACGAATCTAAATGTGTATATACTGTTC
          1 GGAGCTGTAATATATCTCCCTTTTGTTCAACACGAATCTAAATGTGTATATACTGTTC

                                                                      
       3104 GGAGCTGTAATATATCTCCCTTTTGTTCAACACGAATCTAAATGTGTATATACTGTTC
          1 GGAGCTGTAATATATCTCCCTTTTGTTCAACACGAATCTAAATGTGTATATACTGTTC

              
       3162 GG
          1 GG

       3164 TTTTAAATAA


Statistics
Matches: 60,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  58   60  1.00

ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37


Consensus pattern (58 bp):   
GGAGCTGTAATATATCTCCCTTTTGTTCAACACGAATCTAAATGTGTATATACTGTTC
Done.