Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00139.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 645

Length: 1076
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26


Found at i:949 original size:54 final size:55

Alignment explanation


    Indices: 890--1000  Score: 206
    Period size: 55  Copynumber: 2.0  Consensus size: 55

        880 TTGTTGAAGA

                                     *                             
        890 TGATCAAAGTGGAGGGTTTTG-AAATAAAAAATTATGTTTTTAGGATTGAAAGTG
          1 TGATCAAAGTGGAGGGTTTTGAAAAAAAAAAATTATGTTTTTAGGATTGAAAGTG

                                                                   
        944 TGATCAAAGTGGAGGGTTTTGAAAAAAAAAAATTATGTTTTTAGGATTGAAAGTG
          1 TGATCAAAGTGGAGGGTTTTGAAAAAAAAAAATTATGTTTTTAGGATTGAAAGTG

              
        999 TG
          1 TG

       1001 CAACTTTTTC


Statistics
Matches: 55,  Mismatches: 1, Indels: 1
        0.96            0.02        0.02

Matches are distributed among these distances:
  54   21  0.38
  55   34  0.62

ACGTcount: A:0.38, C:0.02, G:0.26, T:0.34


Consensus pattern (55 bp):   
TGATCAAAGTGGAGGGTTTTGAAAAAAAAAAATTATGTTTTTAGGATTGAAAGTG

Done.