Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00678.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3275
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30


Found at i:2031 original size:21 final size:21

Alignment explanation


    Indices: 1989--2032  Score: 61
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1979 CAGGTTATAA

                            **   
       1989 TCCTCCATCAAAAAGCGGTGG
          1 TCCTCCATCAAAAAGCAATGG

                 *               
       2010 TCCTCTATCAAAAAGCAATGG
          1 TCCTCCATCAAAAAGCAATGG

              
       2031 TC
          1 TC

       2033 GTATCTCGAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23


Consensus pattern (21 bp):   
TCCTCCATCAAAAAGCAATGG
Done.