Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00686.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2474
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33


Found at i:1946 original size:136 final size:137

Alignment explanation


    Indices: 1700--1985  Score: 493
    Period size: 136  Copynumber: 2.1  Consensus size: 137

       1690 GAGTAGTCTC

                                                                             
       1700 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                             *          *           *                        
       1765 TATTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATTTGAAAAGGGCTCTGGCCCAGTACC
         66 TATTATCTGAATAAGGGCCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1830 ACTGTTA
        131 ACTGTTA

                                    * *                                      
       1837 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

             *                                                               
       1901 TGTTATCTGAATAAGGGCCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TATTATCTGAATAAGGGCCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1966 ACTGTTA
        131 ACTGTTA

              **         
       1973 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1986 AGGCCCAATG


Statistics
Matches: 141,  Mismatches: 8, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 136  121  0.86
 137   20  0.14

ACGTcount: A:0.26, C:0.19, G:0.24, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTAATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TATTATCTGAATAAGGGCCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.