Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00144.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2394
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29


Found at i:862 original size:34 final size:34

Alignment explanation


    Indices: 819--886  Score: 136
    Period size: 34  Copynumber: 2.0  Consensus size: 34

        809 TGCACACCAA

                                              
        819 ATAATAATGTTTTAGTGCTTTTCAATAGTTGATT
          1 ATAATAATGTTTTAGTGCTTTTCAATAGTTGATT

                                              
        853 ATAATAATGTTTTAGTGCTTTTCAATAGTTGATT
          1 ATAATAATGTTTTAGTGCTTTTCAATAGTTGATT

        887 TGCTTGAGTT


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  34   34  1.00

ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50


Consensus pattern (34 bp):   
ATAATAATGTTTTAGTGCTTTTCAATAGTTGATT
Done.