Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00689.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4931
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.29


Found at i:2658 original size:21 final size:21

Alignment explanation


    Indices: 2632--2672  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2622 AGACAGGCGA

                   *             
       2632 TACTCCACAACAGGTGGAGTG
          1 TACTCCAAAACAGGTGGAGTG

                        *       
       2653 TACTCCAAAACATGTGGAGT
          1 TACTCCAAAACAGGTGGAGT

       2673 TTGAGCAAGT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22


Consensus pattern (21 bp):   
TACTCCAAAACAGGTGGAGTG
Done.