Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00691.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 909

Length: 1515
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33


Found at i:1188 original size:136 final size:137

Alignment explanation


    Indices: 943--1228  Score: 511
    Period size: 136  Copynumber: 2.1  Consensus size: 137

        933 GAGTAGTCTC

                      *                                                      
        943 CCCAAATGGGTTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                  *        * 
       1008 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTATC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC

                   
       1073 ACTGTTA
        131 ACTGTTA

                                    *                                        
       1080 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1144 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC

                   
       1209 ACTGTTA
        131 ACTGTTA

              **         
       1216 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1229 AGGCCCAATG


Statistics
Matches: 143,  Mismatches: 6, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
 136  124  0.87
 137   19  0.13

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTAGCCCAGTACC
ACTGTTA
Done.