Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00690.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4318
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30


Found at i:3291 original size:26 final size:26

Alignment explanation


    Indices: 3256--3391  Score: 227
    Period size: 26  Copynumber: 5.2  Consensus size: 26

       3246 TGATACAAAT

                                      
       3256 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

             *                        
       3282 TAATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

             *                *    *  
       3308 TAATAATAGGTTAGGTAAGTGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                   *  
       3334 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                      
       3360 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
       3386 TGATAA
          1 TGATAA

       3392 GAATTTCATG


Statistics
Matches: 104,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26  104  1.00

ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.