Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00692.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2562
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27


Found at i:1418 original size:12 final size:12

Alignment explanation


    Indices: 1401--1455  Score: 110
    Period size: 12  Copynumber: 4.6  Consensus size: 12

       1391 ACTCGGGGAA

                        
       1401 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
       1413 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
       1425 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
       1437 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                   
       1449 GAGGCCG
          1 GAGGCCG

       1456 AGGTAGTACT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   43  1.00

ACGTcount: A:0.09, C:0.25, G:0.51, T:0.15


Consensus pattern (12 bp):   
GAGGCCGTGGTC

Done.