Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00700.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 388

Length: 647
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33


Found at i:521 original size:19 final size:19

Alignment explanation


    Indices: 497--533  Score: 74
    Period size: 19  Copynumber: 1.9  Consensus size: 19

        487 CTACGTTTGA

                               
        497 TAGCTGAAAATCCTACCTG
          1 TAGCTGAAAATCCTACCTG

                              
        516 TAGCTGAAAATCCTACCT
          1 TAGCTGAAAATCCTACCT

        534 ACTGATGAAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27


Consensus pattern (19 bp):   
TAGCTGAAAATCCTACCTG

Found at i:542 original size:19 final size:19

Alignment explanation


    Indices: 501--542  Score: 50
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        491 GTTTGATAGC

                          *   *
        501 TGAAAATCCTACCTGTAGC
          1 TGAAAATCCTACCTCTAGA

                                
        520 TGAAAATCCTACCTACT-GA
          1 TGAAAATCCTACCT-CTAGA

                
        539 TGAA
          1 TGAA

        543 CTTATTTTGC


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  19   19  0.95
  20    1  0.05

ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26


Consensus pattern (19 bp):   
TGAAAATCCTACCTCTAGA
Done.