Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00701.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7755
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27


Found at i:6761 original size:16 final size:17

Alignment explanation


    Indices: 6740--6774  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       6730 CACCCAACCT

                      *      
       6740 AAAAT-AACACAAATAA
          1 AAAATAAACAAAAATAA

                             
       6756 AAAATAAACAAAAATAA
          1 AAAATAAACAAAAATAA

              
       6773 AA
          1 AA

       6775 TTTTAAACAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    5  0.29
  17   12  0.71

ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11


Consensus pattern (17 bp):   
AAAATAAACAAAAATAA

Found at i:6774 original size:15 final size:17

Alignment explanation


    Indices: 6739--6775  Score: 53
    Period size: 15  Copynumber: 2.4  Consensus size: 17

       6729 CCACCCAACC

                             
       6739 TAAAATAACACAAATAA
          1 TAAAATAACACAAATAA

                             
       6756 -AAAATAA-ACAAA-AA
          1 TAAAATAACACAAATAA

                  
       6770 TAAAAT
          1 TAAAAT

       6776 TTTAAACACC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  14    2  0.11
  15   10  0.53
  16    7  0.37

ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16


Consensus pattern (17 bp):   
TAAAATAACACAAATAA
Done.