Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00701.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8296
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28


Found at i:7302 original size:16 final size:17

Alignment explanation


    Indices: 7281--7315  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       7271 CACCCAACCT

                      *      
       7281 AAAAT-AACACAAATAA
          1 AAAATAAACAAAAATAA

                             
       7297 AAAATAAACAAAAATAA
          1 AAAATAAACAAAAATAA

              
       7314 AA
          1 AA

       7316 TTTTAAACAC


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16    5  0.29
  17   12  0.71

ACGTcount: A:0.80, C:0.09, G:0.00, T:0.11


Consensus pattern (17 bp):   
AAAATAAACAAAAATAA

Found at i:7315 original size:15 final size:17

Alignment explanation


    Indices: 7280--7316  Score: 53
    Period size: 15  Copynumber: 2.4  Consensus size: 17

       7270 CCACCCAACC

                             
       7280 TAAAATAACACAAATAA
          1 TAAAATAACACAAATAA

                             
       7297 -AAAATAA-ACAAA-AA
          1 TAAAATAACACAAATAA

                  
       7311 TAAAAT
          1 TAAAAT

       7317 TTTAAACACC


Statistics
Matches: 19,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  14    2  0.11
  15   10  0.53
  16    7  0.37

ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16


Consensus pattern (17 bp):   
TAAAATAACACAAATAA
Done.