Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00705.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2604
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34


Found at i:1929 original size:48 final size:48

Alignment explanation


    Indices: 1876--1967  Score: 166
    Period size: 48  Copynumber: 1.9  Consensus size: 48

       1866 CTAACCAACC

                                *     *                     
       1876 CGTAACGAAGGACCACTTTTTTCTTCGTTATTGTTCGCGTGCCAGCTT
          1 CGTAACGAAGGACCACTTTTCTCTTCATTATTGTTCGCGTGCCAGCTT

                                                        
       1924 CGTAACGAAGGACCACTTTTCTCTTCATTATTGTTCGCGTGCCA
          1 CGTAACGAAGGACCACTTTTCTCTTCATTATTGTTCGCGTGCCA

       1968 TCTTACTAGA


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  48   42  1.00

ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36


Consensus pattern (48 bp):   
CGTAACGAAGGACCACTTTTCTCTTCATTATTGTTCGCGTGCCAGCTT
Done.