Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00708.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.33


Found at i:561 original size:19 final size:21

Alignment explanation


    Indices: 528--566  Score: 55
    Period size: 19  Copynumber: 2.0  Consensus size: 21

        518 AACGCCTTCT

                                 
        528 GATTCGACACCGATG-GTATA
          1 GATTCGACACCGATGAGTATA

                      *         
        548 GATT-GACACGGATGAGTAT
          1 GATTCGACACCGATGAGTAT

        567 CGTGCAATCC


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    9  0.53
  20    8  0.47

ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26


Consensus pattern (21 bp):   
GATTCGACACCGATGAGTATA

Done.