Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00721.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3066
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Found at i:2519 original size:7 final size:7

Alignment explanation


    Indices: 2509--2540  Score: 57
    Period size: 7  Copynumber: 4.7  Consensus size: 7

       2499 CGTGAAAATT

                   
       2509 AAAAAA-
          1 AAAAAAG

                   
       2515 AAAAAAG
          1 AAAAAAG

                   
       2522 AAAAAAG
          1 AAAAAAG

                   
       2529 AAAAAAG
          1 AAAAAAG

                 
       2536 AAAAA
          1 AAAAA

       2541 GAGTCCGAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6    6  0.24
   7   19  0.76

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (7 bp):   
AAAAAAG

Done.