Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00145.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1982
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Found at i:104 original size:29 final size:29

Alignment explanation


    Indices: 62--120  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

         52 ACGCTGCCAA

                                         
         62 AACCAGCATTTTGCTGCTACTCCACTGTC
          1 AACCAGCATTTTGCTGCTACTCCACTGTC

                                         
         91 AACCAGCATTTTGCTGCTACTCCACTGTC
          1 AACCAGCATTTTGCTGCTACTCCACTGTC

             
        120 A
          1 A

        121 TTTTTCACTA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.22, C:0.34, G:0.14, T:0.31


Consensus pattern (29 bp):   
AACCAGCATTTTGCTGCTACTCCACTGTC
Done.