Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00729.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1755
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33


Found at i:1058 original size:168 final size:164

Alignment explanation


    Indices: 760--1064  Score: 353
    Period size: 168  Copynumber: 1.8  Consensus size: 164

        750 GCTGTTCTGT

                    *            *                                    **     
        760 CTTTGCACTTATGGTGATAATCAAGTATGCTATTGATTATATATGAGGTAATCTTAGCTTGATTG
          1 CTTTGCACATATGGTGATAATAAAGTATGCTATTGATTATATATGAGGTAATCTTAGCCCGATTG

                                              *                **   *        
        825 GCATCGAGATGGTCCGTAGAAGGCTTGCATAGAATTGTTTTCATTATCGAACTGTATGAGGAAGA
         66 GCATCGAGATGGTCCGTAGAAGGCTTGCATAGAAATGTTTTCATTATCGAAAAGTAAGAGGAAGA

              *                               
        890 ATGAATTACGGTATACGTTTTATTGCTCTCCTCA
        131 ATAAATTACGGTATACGTTTTATTGCTCTCCTCA

                        *     *                                *       *     
        924 CTTTGCACATATTGTGATGATAAAAGTATGCTATTGATTATATATAATGAGTTAATCTTGGCCCG
          1 CTTTGCACATATGGTGATAAT-AAAGTATGCTATTGA-T-TATAT-ATGAGGTAATCTTAGCCCG

                     *  *        *  *       *            **  *               
        989 ATTGGCATCTAGCTGGTCCGTGGAGGGCTTGCCTAGAAATGTTTTTGTTGT-GAAAAAGTACAG-
         62 ATTGGCATCGAGATGGTCCGTAGAAGGCTTGCATAGAAATGTTTTCATTATCG-AAAAGTA-AGA

                         
       1052 GGAAGAATAAATT
        125 GGAAGAATAAATT

       1065 GGGGGTCAGT


Statistics
Matches: 114,  Mismatches: 21, Indels: 8
        0.80            0.15        0.06

Matches are distributed among these distances:
 164   18  0.16
 165   14  0.12
 166    1  0.01
 167    6  0.05
 168   74  0.65
 169    1  0.01

ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35


Consensus pattern (164 bp):   
CTTTGCACATATGGTGATAATAAAGTATGCTATTGATTATATATGAGGTAATCTTAGCCCGATTG
GCATCGAGATGGTCCGTAGAAGGCTTGCATAGAAATGTTTTCATTATCGAAAAGTAAGAGGAAGA
ATAAATTACGGTATACGTTTTATTGCTCTCCTCA
Done.