Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00731.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1272 original size:30 final size:32

Alignment explanation


    Indices: 1231--1295  Score: 89
    Period size: 30  Copynumber: 2.1  Consensus size: 32

       1221 ATGTCTAGCC

                                *           
       1231 AAGTAAATTAATTG-ATTTTTTA-ATTAAATA
          1 AAGTAAATTAATTGAATTTTATATATTAAATA

                *                        *  
       1261 AAGTTAATTAATTGAATTTTATATATTAATTA
          1 AAGTAAATTAATTGAATTTTATATATTAAATA

               
       1293 AAG
          1 AAG

       1296 GAAAATATTA


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  30   13  0.43
  31    7  0.23
  32   10  0.33

ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46


Consensus pattern (32 bp):   
AAGTAAATTAATTGAATTTTATATATTAAATA
Done.