Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00731.N6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 931

Length: 1552
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:834 original size:31 final size:31

Alignment explanation


    Indices: 799--860  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

        789 ATGATCAATT

                                           
        799 TTGCAGAAGGTCGAGAGAATATCAAGCATTG
          1 TTGCAGAAGGTCGAGAGAATATCAAGCATTG

                           *               
        830 TTGCAGAAGGTCGAGGGAATATCAAGCATTG
          1 TTGCAGAAGGTCGAGAGAATATCAAGCATTG

        861 CCAGTATTAT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.34, C:0.13, G:0.31, T:0.23


Consensus pattern (31 bp):   
TTGCAGAAGGTCGAGAGAATATCAAGCATTG

Found at i:1345 original size:30 final size:32

Alignment explanation


    Indices: 1304--1368  Score: 89
    Period size: 30  Copynumber: 2.1  Consensus size: 32

       1294 ATGTCTAGCC

                                *           
       1304 AAGTAAATTAATTG-ATTTTTTA-ATTAAATA
          1 AAGTAAATTAATTGAATTTTATATATTAAATA

                *                        *  
       1334 AAGTTAATTAATTGAATTTTATATATTAATTA
          1 AAGTAAATTAATTGAATTTTATATATTAAATA

               
       1366 AAG
          1 AAG

       1369 GAAAATATTA


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  30   13  0.43
  31    7  0.23
  32   10  0.33

ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46


Consensus pattern (32 bp):   
AAGTAAATTAATTGAATTTTATATATTAAATA
Done.