Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00732.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3861
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30


Found at i:180 original size:26 final size:26

Alignment explanation


    Indices: 147--256  Score: 184
    Period size: 26  Copynumber: 4.2  Consensus size: 26

        137 TGATACAAAT

                                      
        147 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

               *     *          *  *  
        173 TGACAATGGATTAGGTAAATATTCCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        199 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        225 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        251 TGATAA
          1 TGATAA

        257 GAATTTCATG


Statistics
Matches: 76,  Mismatches: 8, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  26   76  1.00

ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Done.