Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00737.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3657
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32


Found at i:291 original size:6 final size:6

Alignment explanation


    Indices: 282--314  Score: 57
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        272 CTCGATAGGT

                             *                    
        282 ATAGAG ATAGAG ATAAAG ATAGAG ATAGAG ATA
          1 ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG ATA

        315 ATCATCATGA


Statistics
Matches: 25,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.55, C:0.00, G:0.27, T:0.18


Consensus pattern (6 bp):   
ATAGAG
Done.