Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00738.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3189
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31


Found at i:2590 original size:18 final size:17

Alignment explanation


    Indices: 2567--2606  Score: 71
    Period size: 18  Copynumber: 2.3  Consensus size: 17

       2557 TTATGGCAAA

                             
       2567 TTTTCTAGCAGGGATCG
          1 TTTTCTAGCAGGGATCG

                              
       2584 CTTTTCTAGCAGGGATCG
          1 -TTTTCTAGCAGGGATCG

                 
       2602 TTTTC
          1 TTTTC

       2607 CACGAGGCGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  17    5  0.23
  18   17  0.77

ACGTcount: A:0.15, C:0.20, G:0.25, T:0.40


Consensus pattern (17 bp):   
TTTTCTAGCAGGGATCG
Done.