Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00743.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2991
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30


Found at i:147 original size:10 final size:10

Alignment explanation


    Indices: 112--159  Score: 53
    Period size: 11  Copynumber: 4.7  Consensus size: 10

        102 TTTTTGCATA

                       
        112 TCTTTCCTTCT
          1 TCTTTCC-TCT

                     *
        123 TCTTT-CTCA
          1 TCTTTCCTCT

                      
        132 TCTTTCCTCT
          1 TCTTTCCTCT

                       
        142 TCTTTCCCTCT
          1 TCTTT-CCTCT

             *     
        153 TTTTTCC
          1 TCTTTCC

        160 CTAATTTTTT


Statistics
Matches: 32,  Mismatches: 3, Indels: 5
        0.80            0.08        0.12

Matches are distributed among these distances:
   9    7  0.22
  10   11  0.34
  11   14  0.44

ACGTcount: A:0.02, C:0.38, G:0.00, T:0.60


Consensus pattern (10 bp):   
TCTTTCCTCT

Found at i:731 original size:6 final size:6

Alignment explanation


    Indices: 713--759  Score: 67
    Period size: 6  Copynumber: 7.8  Consensus size: 6

        703 CTGAAGCAGT

                   *        *                         *           
        713 GGCTCC AGCTCC GGATCC GGCTCC GGCTCC GGCTCC AGCTCC GGCTC
          1 GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTC

        760 TGGTTTCGCT


Statistics
Matches: 35,  Mismatches: 6, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
   6   35  1.00

ACGTcount: A:0.06, C:0.47, G:0.30, T:0.17


Consensus pattern (6 bp):   
GGCTCC

Found at i:2229 original size:15 final size:15

Alignment explanation


    Indices: 2209--2244  Score: 72
    Period size: 15  Copynumber: 2.4  Consensus size: 15

       2199 GAGAGCTTGA

                           
       2209 AAGTGCGTACGCTTC
          1 AAGTGCGTACGCTTC

                           
       2224 AAGTGCGTACGCTTC
          1 AAGTGCGTACGCTTC

                  
       2239 AAGTGC
          1 AAGTGC

       2245 TTCCGACTTC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25


Consensus pattern (15 bp):   
AAGTGCGTACGCTTC
Done.