Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2000
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27


Found at i:207 original size:15 final size:15

Alignment explanation


    Indices: 187--231  Score: 72
    Period size: 15  Copynumber: 3.0  Consensus size: 15

        177 CAAGAACAAG

                      *    
        187 AGCAACAACAGCAGC
          1 AGCAACAACAACAGC

                           
        202 AGCAACAACAACAGC
          1 AGCAACAACAACAGC

                *          
        217 AGCAGCAACAACAGC
          1 AGCAACAACAACAGC

        232 TTCTTGGTTT


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   28  1.00

ACGTcount: A:0.49, C:0.33, G:0.18, T:0.00


Consensus pattern (15 bp):   
AGCAACAACAACAGC

Found at i:210 original size:18 final size:18

Alignment explanation


    Indices: 189--229  Score: 82
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        179 AGAACAAGAG

                              
        189 CAACAACAGCAGCAGCAA
          1 CAACAACAGCAGCAGCAA

                              
        207 CAACAACAGCAGCAGCAA
          1 CAACAACAGCAGCAGCAA

                 
        225 CAACA
          1 CAACA

        230 GCTTCTTGGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   23  1.00

ACGTcount: A:0.51, C:0.34, G:0.15, T:0.00


Consensus pattern (18 bp):   
CAACAACAGCAGCAGCAA
Done.