Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00773.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1540
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27


Found at i:1205 original size:3 final size:3

Alignment explanation


    Indices: 1174--1254  Score: 81
    Period size: 3  Copynumber: 27.0  Consensus size: 3

       1164 TTGCCTTTAT

                    *    *       *    *  *                       *   *     
       1174 GCA GCA ACA GGA GCA GGA GCC GGA GCA GCA GCA GCA GCA GGA GGA GCA
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA

                 *  *                                  
       1222 GCA GGA ACA GCA GCA GCA GCA GCA GCA GCA GCA
          1 GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA GCA

       1255 ACCATCAATG


Statistics
Matches: 62,  Mismatches: 16, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
   3   62  1.00

ACGTcount: A:0.35, C:0.27, G:0.38, T:0.00


Consensus pattern (3 bp):   
GCA
Done.