Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00153.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1979
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:695 original size:45 final size:45

Alignment explanation


    Indices: 630--715  Score: 154
    Period size: 45  Copynumber: 1.9  Consensus size: 45

        620 AATGGCTATG

                                  *                      
        630 GTGGCGGCAATGGATGGAGTTCGTCATCCCCAATGCCACCACCAA
          1 GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCACCAA

                *                                    
        675 GTGGTGGCAATGGATGGAGTTCATCATCCCCAATGCCACCA
          1 GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCA

        716 GGACCAATTT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  45   39  1.00

ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20


Consensus pattern (45 bp):   
GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCACCAA

Found at i:771 original size:21 final size:21

Alignment explanation


    Indices: 714--778  Score: 76
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        704 CCAATGCCAC

                        *   *    
        714 CAGGACCAATTTTTAGCGGTT
          1 CAGGACCAATTTATAGTGGTT

                     *              
        735 CAGGAAGACAAATTTATAGTGGTT
          1 CA-G--GACCAATTTATAGTGGTT

                                
        759 CAGGACCAATTTATAGTGGT
          1 CAGGACCAATTTATAGTGGT

        779 GAAGCAACAA


Statistics
Matches: 37,  Mismatches: 4, Indels: 6
        0.79            0.09        0.13

Matches are distributed among these distances:
  21   18  0.49
  22    1  0.03
  23    1  0.03
  24   17  0.46

ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31


Consensus pattern (21 bp):   
CAGGACCAATTTATAGTGGTT
Done.