Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00797.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2796
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28


Found at i:659 original size:24 final size:24

Alignment explanation


    Indices: 632--677  Score: 65
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        622 ATTGTATCGG

                            *       
        632 ATGAAGAGGAGGAAGATGAAGATT
          1 ATGAAGAGGAGGAAGAAGAAGATT

                * *               
        656 ATGAGGTGGAGGAAGAAGAAGA
          1 ATGAAGAGGAGGAAGAAGAAGA

        678 AGATGACGAT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  24   19  1.00

ACGTcount: A:0.46, C:0.00, G:0.41, T:0.13


Consensus pattern (24 bp):   
ATGAAGAGGAGGAAGAAGAAGATT
Done.