Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00798.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3863
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27


Found at i:1278 original size:78 final size:78

Alignment explanation


    Indices: 1184--1412  Score: 413
    Period size: 78  Copynumber: 2.9  Consensus size: 78

       1174 ATACTGAACT

                       *      *                                              
       1184 GATTAAAAGTACTCCAAATGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT
          1 GATTAAAAGTAGTCCAAAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT

               *         
       1249 CATCTGATGACAA
         66 CATGTGATGACAA

                                    *                 *                      
       1262 GATTAAAAGTAGTCCAAAGGATACAGAAGAATCGGTCCCTGACAATTCTCTTTCTCGAACTGCTT
          1 GATTAAAAGTAGTCCAAAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT

                         
       1327 CATGTGATGACAA
         66 CATGTGATGACAA

                                                                             
       1340 GATTAAAAGTAGTCCAAAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT
          1 GATTAAAAGTAGTCCAAAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT

                    
       1405 CATGTGAT
         66 CATGTGAT

       1413 AAGGTTGAGG


Statistics
Matches: 144,  Mismatches: 7, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  78  144  1.00

ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29


Consensus pattern (78 bp):   
GATTAAAAGTAGTCCAAAGGATACGGAAGAATCGGTCCCTGATAATTCTCTTTCTCGAACTGCTT
CATGTGATGACAA
Done.