Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00847.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2111
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36


Found at i:1443 original size:23 final size:23

Alignment explanation


    Indices: 1417--1463  Score: 60
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       1407 TTTTATATTA

                                    
       1417 TATTATTTTA-ATATTAATAATTT
          1 TATTATTTTATATATTAA-AATTT

                *      *           
       1440 TATTTTTTTATTTATTAAAATTT
          1 TATTATTTTATATATTAAAATTT

             
       1463 T
          1 T

       1464 TATATAATTA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  23   15  0.71
  24    6  0.29

ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66


Consensus pattern (23 bp):   
TATTATTTTATATATTAAAATTT

Found at i:1527 original size:47 final size:47

Alignment explanation


    Indices: 1430--1538  Score: 113
    Period size: 47  Copynumber: 2.4  Consensus size: 47

       1420 TATTTTAATA

                             *                              
       1430 TTAATAATTTTATT-TTTTTATTTATTAAAATTTTTATATAATTATCT
          1 TTAATAA-TTTATTATTATTATTTATTAAAATTTTTATATAATTATCT

                                     *    *                   
       1477 TTAATAATATTATTATTATTATTTTGTTAATATATTTTA-A-AATTAT-T
          1 TTAATAAT-TTATTATTATTA-TTTATTAAAAT-TTTTATATAATTATCT

                             
       1524 TTAA-AATTTA-TATTA
          1 TTAATAATTTATTATTA

       1539 GAGTAATACT


Statistics
Matches: 55,  Mismatches: 3, Indels: 11
        0.80            0.04        0.16

Matches are distributed among these distances:
  44    5  0.09
  45    3  0.05
  46    4  0.07
  47   17  0.31
  48   11  0.20
  49   10  0.18
  50    5  0.09

ACGTcount: A:0.38, C:0.01, G:0.01, T:0.61


Consensus pattern (47 bp):   
TTAATAATTTATTATTATTATTTATTAAAATTTTTATATAATTATCT
Done.