Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00849.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4390
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31


Found at i:4246 original size:22 final size:22

Alignment explanation


    Indices: 4218--4262  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4208 AGGGGGAGTG

                                  
       4218 TAGGAATATTCTGTAAATATTT
          1 TAGGAATATTCTGTAAATATTT

                      *    *      
       4240 TAGGAATATTTTGTAGATATTT
          1 TAGGAATATTCTGTAAATATTT

             
       4262 T
          1 T

       4263 TTTTATTAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49


Consensus pattern (22 bp):   
TAGGAATATTCTGTAAATATTT
Done.