Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00854.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 808

Length: 1348
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:120 original size:11 final size:12

Alignment explanation


    Indices: 94--122  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

         84 AACATTTCTC

                        
         94 CCTTTCGTTGTT
          1 CCTTTCGTTGTT

                        
        106 CCTTTCGTT-TT
          1 CCTTTCGTTGTT

                  
        117 CCTTTC
          1 CCTTTC

        123 TACCATTTTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  11    8  0.47
  12    9  0.53

ACGTcount: A:0.00, C:0.31, G:0.10, T:0.59


Consensus pattern (12 bp):   
CCTTTCGTTGTT
Done.