Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00860.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 876
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.24


Found at i:140 original size:15 final size:15

Alignment explanation


    Indices: 83--145  Score: 56
    Period size: 15  Copynumber: 3.9  Consensus size: 15

         73 ATTCAGCAGT

                           *
         83 AAGGAGAAGAAAATAA
          1 AAGGAGAAGAAAA-AG

                         *  
         99 AAGGA-AAGAAAGGAG
          1 AAGGAGAAGAAA-AAG

                              
        114 AAGAGAAGGAAGAAAAAG
          1 AAG-G-A-GAAGAAAAAG

                          
        132 AAGGAGAAGAAAAA
          1 AAGGAGAAGAAAAA

        146 AAGAAGATTG


Statistics
Matches: 39,  Mismatches: 3, Indels: 11
        0.74            0.06        0.21

Matches are distributed among these distances:
  15   19  0.49
  16    7  0.18
  17    2  0.05
  18    5  0.13
  19    6  0.15

ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02


Consensus pattern (15 bp):   
AAGGAGAAGAAAAAG
Done.