Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00872.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 794

Length: 1324
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26


Found at i:1138 original size:81 final size:80

Alignment explanation


    Indices: 999--1160  Score: 236
    Period size: 81  Copynumber: 2.0  Consensus size: 80

        989 CTTCGAAGCT

                           *                 *        *                      
        999 ACGGAGATCATTTTCGCCTTCCCGATTGGCTAATAGATTGGTTTCACCATTGAAGAGCAGAAAAA
          1 ACGGAGATCATTTTCACCTTCCCGATTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAAAA

                     *     
       1064 CTTTGCAAAGAAGTG
         66 CTTTGCAAAAAAGTG

                                              *                              
       1079 ACGGTAGATCATTTTCACCTTCCC-ATTTGGCTAGCAGATTGGTGTCACCATTGAAGAGCAGAAA
          1 ACGG-AGATCATTTTCACCTTCCCGA-TTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAA

             **              
       1143 AGGTTTGCAAAAAAGTG
         64 AACTTTGCAAAAAAGTG

             
       1160 A
          1 A

       1161 TGGTCCAATG


Statistics
Matches: 73,  Mismatches: 7, Indels: 3
        0.88            0.08        0.04

Matches are distributed among these distances:
  80    5  0.07
  81   68  0.93

ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27


Consensus pattern (80 bp):   
ACGGAGATCATTTTCACCTTCCCGATTGGCTAACAGATTGGTGTCACCATTGAAGAGCAGAAAAA
CTTTGCAAAAAAGTG
Done.