Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00883.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 982

Length: 1637
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32


Found at i:1333 original size:18 final size:18

Alignment explanation


    Indices: 1310--1346  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1300 GAGAATGATT

                              
       1310 TTGTTTTAGCCCATTGCA
          1 TTGTTTTAGCCCATTGCA

                              
       1328 TTGTTTTAGCCCATTGCA
          1 TTGTTTTAGCCCATTGCA

             
       1346 T
          1 T

       1347 ATATTAGCTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46


Consensus pattern (18 bp):   
TTGTTTTAGCCCATTGCA
Done.