Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00884.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.31, C:0.13, G:0.29, T:0.27


Found at i:614 original size:30 final size:30

Alignment explanation


    Indices: 549--614  Score: 107
    Period size: 30  Copynumber: 2.2  Consensus size: 30

        539 CGGTAAGAAT

                 *                        
        549 ATGGGGCAGATGGGCCAAATGGGTGGTCAG
          1 ATGGGTCAGATGGGCCAAATGGGTGGTCAG

                                           
        579 ATGGGTCAGATGGGTCC-AATGGGTGGTCAG
          1 ATGGGTCAGATGGG-CCAAATGGGTGGTCAG

                  
        609 ATGGGT
          1 ATGGGT

        615 TATAACATGG


Statistics
Matches: 34,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
  30   32  0.94
  31    2  0.06

ACGTcount: A:0.21, C:0.12, G:0.45, T:0.21


Consensus pattern (30 bp):   
ATGGGTCAGATGGGCCAAATGGGTGGTCAG
Done.