Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00897.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2078
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.23


Found at i:813 original size:81 final size:81

Alignment explanation


    Indices: 725--966  Score: 385
    Period size: 81  Copynumber: 3.0  Consensus size: 81

        715 CTTCTAGAGG

                                  *    *         *      *      *             
        725 TGGTACTGATTTATCTCCTCCTTGGAAGCGGAGGGTTAGGAATGGCACACCCTCACCAGAACCTT
          1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT

                            
        790 TAGTAAACAGAGCAGA
         66 TAGTAAACAGAGCAGA

                                         **                                  
        806 TGGTACTGATTTATCTCCTCCTAGGAAACATAGGGTTCGGAATGACACACCTTCACCAGAACCTT
          1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT

                    *  *    
        871 TAGTAAACCGAACAGA
         66 TAGTAAACAGAGCAGA

                                 *                                           
        887 TGGTACTGATTTATCTCCTCCAAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
          1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT

               *           
        952 TAGCAAACAGAGCAG
         66 TAGTAAACAGAGCAG

        967 GTGCTGATCT


Statistics
Matches: 146,  Mismatches: 15, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  81  146  1.00

ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23


Consensus pattern (81 bp):   
TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
TAGTAAACAGAGCAGA
Done.