Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00915.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5674
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.30


Found at i:131 original size:6 final size:6

Alignment explanation


    Indices: 112--175  Score: 56
    Period size: 6  Copynumber: 10.2  Consensus size: 6

        102 CAGATGAAGT

                      *                *             * *         *    
        112 AAAAGA AAAGGA AAAAGA AACAGAAA CAAAAGA AAAGGT AAAAGA AGAAGA
          1 AAAAGA AAAAGA AAAAGA AA-A-AGA -AAAAGA AAAAGA AAAAGA AAAAGA

                           
        163 AAAAGA AAAAGA A
          1 AAAAGA AAAAGA A

        176 GAGATTGCCA


Statistics
Matches: 45,  Mismatches: 10, Indels: 6
        0.74            0.16        0.10

Matches are distributed among these distances:
   6   37  0.82
   7    3  0.07
   8    3  0.07
   9    2  0.04

ACGTcount: A:0.75, C:0.03, G:0.20, T:0.02


Consensus pattern (6 bp):   
AAAAGA

Done.