Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00924.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2240
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30


Found at i:2190 original size:16 final size:16

Alignment explanation


    Indices: 2169--2203  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       2159 TCTTTTTGTC

                            
       2169 ATTTTTATCTGTTTTT
          1 ATTTTTATCTGTTTTT

                  * *       
       2185 ATTTTTCTTTGTTTTT
          1 ATTTTTATCTGTTTTT

               
       2201 ATT
          1 ATT

       2204 AATGAGAAAG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.11, C:0.06, G:0.06, T:0.77


Consensus pattern (16 bp):   
ATTTTTATCTGTTTTT
Done.