Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00924.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2340
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29


Found at i:2245 original size:16 final size:16

Alignment explanation


    Indices: 2221--2252  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       2211 GATTTGGTGA

                *           
       2221 CGGTGATGTGTGCTAG
          1 CGGTAATGTGTGCTAG

                            
       2237 CGGTAATGTGTGCTAG
          1 CGGTAATGTGTGCTAG

       2253 TGGTGTGAGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.16, C:0.12, G:0.41, T:0.31


Consensus pattern (16 bp):   
CGGTAATGTGTGCTAG
Done.