Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00177.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 789

Length: 1316
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:1112 original size:85 final size:84

Alignment explanation


    Indices: 963--1128  Score: 260
    Period size: 85  Copynumber: 2.0  Consensus size: 84

        953 TAACTGACAT

                                         *         *                   *     
        963 ATGGACTGAGGAGGATGGGGATTGTAAGATAATTCACTCGGTGGGTTGAGAGCCATAAAGTGAGG
          1 ATGGACTGAGGAGGATGGGGATTGTAAGACAATTCACTCAGTGGGTTGAGAGCCATAAAATGAGG

                               
       1028 GTTTGAAGTAAAAGAGTTG
         66 GTTTGAAGTAAAAGAGTTG

                 *                          *                    * *         
       1047 ATGGATTGAGGAGGATGGGGACTTGTAAGACAGTTCACTCAGTGGGTTGAGAGTCGTAAAATGAG
          1 ATGGACTGAGGAGGATGGGGA-TTGTAAGACAATTCACTCAGTGGGTTGAGAGCCATAAAATGAG

                             
       1112 GGTTTGAAGTAAAAGAG
         65 GGTTTGAAGTAAAAGAG

       1129 CTGCAGACAA


Statistics
Matches: 74,  Mismatches: 7, Indels: 1
        0.90            0.09        0.01

Matches are distributed among these distances:
  84   20  0.27
  85   54  0.73

ACGTcount: A:0.31, C:0.07, G:0.37, T:0.25


Consensus pattern (84 bp):   
ATGGACTGAGGAGGATGGGGATTGTAAGACAATTCACTCAGTGGGTTGAGAGCCATAAAATGAGG
GTTTGAAGTAAAAGAGTTG
Done.