Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00936.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4199
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:1042 original size:33 final size:33

Alignment explanation


    Indices: 1005--1067  Score: 99
    Period size: 33  Copynumber: 1.9  Consensus size: 33

        995 TGATAAATTG

                                             
       1005 TATTTCGGTCCTAATAAACGAACCAAAAAATCA
          1 TATTTCGGTCCTAATAAACGAACCAAAAAATCA

                 * *     *                
       1038 TATTTTGTTCCTACTAAACGAACCAAAAAA
          1 TATTTCGGTCCTAATAAACGAACCAAAAAA

       1068 GACTACCCCT


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  33   27  1.00

ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27


Consensus pattern (33 bp):   
TATTTCGGTCCTAATAAACGAACCAAAAAATCA
Done.