Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00976.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2248
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25


Found at i:285 original size:3 final size:3

Alignment explanation


    Indices: 277--308  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        267 CCCTCAGCTG

                                                      
        277 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
          1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA

        309 GCAGCAGCAG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.34, C:0.34, G:0.00, T:0.31


Consensus pattern (3 bp):   
CAT

Found at i:313 original size:3 final size:3

Alignment explanation


    Indices: 307--331  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        297 TCATCATCAT

                                             
        307 CAG CAG CAG CAG CAG CAG CAG CAG C
          1 CAG CAG CAG CAG CAG CAG CAG CAG C

        332 CTCAGTTGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00


Consensus pattern (3 bp):   
CAG

Found at i:741 original size:3 final size:3

Alignment explanation


    Indices: 708--751  Score: 52
    Period size: 3  Copynumber: 14.7  Consensus size: 3

        698 AAGCTGAGAA

                    *       *       *       *                         
        708 TCC TCC ACC TCC ACC TCC ACC TCC GCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

        752 ATCATCATAG


Statistics
Matches: 33,  Mismatches: 8, Indels: 0
        0.80            0.20        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.07, C:0.66, G:0.02, T:0.25


Consensus pattern (3 bp):   
TCC

Done.