Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00982.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3596
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37


Found at i:93 original size:14 final size:14

Alignment explanation


    Indices: 74--104  Score: 62
    Period size: 14  Copynumber: 2.2  Consensus size: 14

         64 ATCTAATTTT

                          
         74 TCCCCAAATCAAAA
          1 TCCCCAAATCAAAA

                          
         88 TCCCCAAATCAAAA
          1 TCCCCAAATCAAAA

               
        102 TCC
          1 TCC

        105 TTCCATCATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   17  1.00

ACGTcount: A:0.45, C:0.39, G:0.00, T:0.16


Consensus pattern (14 bp):   
TCCCCAAATCAAAA

Found at i:191 original size:14 final size:14

Alignment explanation


    Indices: 172--201  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        162 ATTTCCTGTT

                          
        172 TCTCTAAATCTCCA
          1 TCTCTAAATCTCCA

                          
        186 TCTCTAAATCTCCA
          1 TCTCTAAATCTCCA

              
        200 TC
          1 TC

        202 CCTTTGATTT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.27, C:0.37, G:0.00, T:0.37


Consensus pattern (14 bp):   
TCTCTAAATCTCCA

Found at i:1200 original size:37 final size:37

Alignment explanation


    Indices: 1158--1232  Score: 132
    Period size: 37  Copynumber: 2.0  Consensus size: 37

       1148 GTTTGTTTAC

                               *         *       
       1158 TTGCAATCATGCTTATTGCCCTTATTTTTTTTGTTCG
          1 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG

                                                 
       1195 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
          1 TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG

             
       1232 T
          1 T

       1233 GCTACTTTTT


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   36  1.00

ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53


Consensus pattern (37 bp):   
TTGCAATCATGCTTATTGCACTTATTTTTGTTGTTCG
Done.