Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00994.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 361

Length: 603
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33


Found at i:570 original size:12 final size:12

Alignment explanation


    Indices: 553--583  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

        543 TTGAGTTGTA

                        
        553 AATGGAGGTGAG
          1 AATGGAGGTGAG

                   *    
        565 AATGGAGTTGAG
          1 AATGGAGGTGAG

                   
        577 AATGGAG
          1 AATGGAG

        584 CATGCTATTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.35, C:0.00, G:0.45, T:0.19


Consensus pattern (12 bp):   
AATGGAGGTGAG
Done.