Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00995.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1920
ACGTcount: A:0.30, C:0.16, G:0.15, T:0.39


Found at i:711 original size:22 final size:22

Alignment explanation


    Indices: 686--729  Score: 54
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        676 TGTGTTGTTG

                   *               
        686 TTTGCAATTTTTGGATT-ATTTA
          1 TTTGCAAATTTT-GATTAATTTA

                *                 
        708 TTTGTAAATTTTGATTAATTTA
          1 TTTGCAAATTTTGATTAATTTA

        730 ATTATATGTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21    4  0.21
  22   15  0.79

ACGTcount: A:0.27, C:0.02, G:0.11, T:0.59


Consensus pattern (22 bp):   
TTTGCAAATTTTGATTAATTTA

Found at i:1738 original size:12 final size:12

Alignment explanation


    Indices: 1721--1751  Score: 53
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       1711 TTGAGTTGTA

                        
       1721 AATGGAGGTGAG
          1 AATGGAGGTGAG

                   *    
       1733 AATGGAGTTGAG
          1 AATGGAGGTGAG

                   
       1745 AATGGAG
          1 AATGGAG

       1752 CATGCTATTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.35, C:0.00, G:0.45, T:0.19


Consensus pattern (12 bp):   
AATGGAGGTGAG
Done.