Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga11g00998.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3930
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33


Found at i:1132 original size:22 final size:22

Alignment explanation


    Indices: 1107--1149  Score: 77
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       1097 TTCTAGCTAT

                            *     
       1107 CGATTGAGTCGAATTCGAATTA
          1 CGATTGAGTCGAATTCAAATTA

                                 
       1129 CGATTGAGTCGAATTCAAATT
          1 CGATTGAGTCGAATTCAAATT

       1150 TAGTAATAAT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.33, C:0.14, G:0.21, T:0.33


Consensus pattern (22 bp):   
CGATTGAGTCGAATTCAAATTA
Done.